REACTION_CXSMILES
|
NCC(O)=O.[CH3:6][C:7]1[N:12]=[CH:11][C:10]([CH2:13][OH:14])=[C:9]([CH2:15][OH:16])[C:8]=1[OH:17].Cl.[NH4+].[Cl-].NC(N)=O>C(O)C(N)(CO)CO.Cl>[CH3:6][C:7]1[C:8]([OH:17])=[C:9]([CH2:15][OH:16])[C:10]([CH2:13][OH:14])=[CH:11][N:12]=1 |f:1.2,3.4,6.7|
|
Name
|
reaction
|
Quantity
|
5 mL
|
Type
|
reactant
|
Smiles
|
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
NCC(=O)O
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
CC1=C(C(=C(C=N1)CO)CO)O.Cl
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
[NH4+].[Cl-]
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
NC(=O)N
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
CC1=C(C(=C(C=N1)CO)CO)O.Cl
|
Name
|
Tris-HCl
|
Quantity
|
0 (± 1) mol
|
Type
|
solvent
|
Smiles
|
C(C(CO)(CO)N)O.Cl
|
Control Type
|
UNSPECIFIED
|
Setpoint
|
30 °C
|
Type
|
CUSTOM
|
Details
|
a reciprocal shaking (275 rpm) for 30 min at 30° C
|
Rate
|
UNSPECIFIED
|
RPM
|
0
|
Conditions are dynamic
|
1
|
Details
|
See reaction.notes.procedure_details.
|
Type
|
CUSTOM
|
Details
|
was cultured in a flask
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc for 16 hours at 30° C.
|
Duration
|
16 h
|
Type
|
ADDITION
|
Details
|
the cell suspension of the strain
|
Type
|
CUSTOM
|
Details
|
was prepared
|
Type
|
WASH
|
Details
|
The cells of each reaction mixture were washed twice with sterile saline
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc
|
Type
|
WAIT
|
Details
|
the plates were incubated for 2-3 days at 30° C
|
Duration
|
2.5 (± 0.5) d
|
Type
|
CUSTOM
|
Details
|
were recovered
|
Type
|
ADDITION
|
Details
|
After centrifugation of the suspension, the cell suspension was diluted
|
Type
|
CUSTOM
|
Details
|
to give a turbidity of OD600=1.6
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
WAIT
|
Details
|
on LBMCG plate, and then the plates were incubated for 4 days at 30° C
|
Duration
|
4 d
|
Type
|
ADDITION
|
Details
|
Ten colonies treated with 50 μg/ml of NTG grown on plates LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc
|
Type
|
WAIT
|
Details
|
After incubation for 2 days at 30° C.
|
Duration
|
2 d
|
Type
|
ADDITION
|
Details
|
containing 8 ml of SM medium
|
Type
|
STIRRING
|
Details
|
the tubes were shaken on a reciprocal shaker (275 rpm) at 30° C
|
Type
|
STIRRING
|
Details
|
After shaking for 19 hours
|
Duration
|
19 h
|
Type
|
CUSTOM
|
Details
|
each 4 ml of culture broth was transferred to a 500-ml flask with two baffles
|
Type
|
ADDITION
|
Details
|
containing 200 ml of PM medium
|
Type
|
STIRRING
|
Details
|
shaken on a rotary shaker (180 rpm) at 30° C
|
Type
|
STIRRING
|
Details
|
After shaking for 4 days
|
Duration
|
4 d
|
Type
|
WAIT
|
Details
|
the shaking were further continued for 3 days
|
Duration
|
3 d
|
Type
|
CUSTOM
|
Details
|
in the supernatant of 7-day culture broth
|
Reaction Time |
30 min |
Name
|
|
Type
|
product
|
Smiles
|
CC1=NC=C(C(=C1O)CO)CO
|
Type | Value | Analysis |
---|---|---|
AMOUNT: MASS | 362 mg |
Source
|
Open Reaction Database (ORD) |
Description
|
The Open Reaction Database (ORD) is an open-access schema and infrastructure for structuring and sharing organic reaction data, including a centralized data repository. The ORD schema supports conventional and emerging technologies, from benchtop reactions to automated high-throughput experiments and flow chemistry. Our vision is that a consistent data representation and infrastructure to support data sharing will enable downstream applications that will greatly improve the state of the art with respect to computer-aided synthesis planning, reaction prediction, and other predictive chemistry tasks. |
REACTION_CXSMILES
|
NCC(O)=O.[CH3:6][C:7]1[N:12]=[CH:11][C:10]([CH2:13][OH:14])=[C:9]([CH2:15][OH:16])[C:8]=1[OH:17].Cl.[NH4+].[Cl-].NC(N)=O>C(O)C(N)(CO)CO.Cl>[CH3:6][C:7]1[C:8]([OH:17])=[C:9]([CH2:15][OH:16])[C:10]([CH2:13][OH:14])=[CH:11][N:12]=1 |f:1.2,3.4,6.7|
|
Name
|
reaction
|
Quantity
|
5 mL
|
Type
|
reactant
|
Smiles
|
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
NCC(=O)O
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
CC1=C(C(=C(C=N1)CO)CO)O.Cl
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
[NH4+].[Cl-]
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
NC(=O)N
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
CC1=C(C(=C(C=N1)CO)CO)O.Cl
|
Name
|
Tris-HCl
|
Quantity
|
0 (± 1) mol
|
Type
|
solvent
|
Smiles
|
C(C(CO)(CO)N)O.Cl
|
Control Type
|
UNSPECIFIED
|
Setpoint
|
30 °C
|
Type
|
CUSTOM
|
Details
|
a reciprocal shaking (275 rpm) for 30 min at 30° C
|
Rate
|
UNSPECIFIED
|
RPM
|
0
|
Conditions are dynamic
|
1
|
Details
|
See reaction.notes.procedure_details.
|
Type
|
CUSTOM
|
Details
|
was cultured in a flask
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc for 16 hours at 30° C.
|
Duration
|
16 h
|
Type
|
ADDITION
|
Details
|
the cell suspension of the strain
|
Type
|
CUSTOM
|
Details
|
was prepared
|
Type
|
WASH
|
Details
|
The cells of each reaction mixture were washed twice with sterile saline
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc
|
Type
|
WAIT
|
Details
|
the plates were incubated for 2-3 days at 30° C
|
Duration
|
2.5 (± 0.5) d
|
Type
|
CUSTOM
|
Details
|
were recovered
|
Type
|
ADDITION
|
Details
|
After centrifugation of the suspension, the cell suspension was diluted
|
Type
|
CUSTOM
|
Details
|
to give a turbidity of OD600=1.6
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
WAIT
|
Details
|
on LBMCG plate, and then the plates were incubated for 4 days at 30° C
|
Duration
|
4 d
|
Type
|
ADDITION
|
Details
|
Ten colonies treated with 50 μg/ml of NTG grown on plates LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc
|
Type
|
WAIT
|
Details
|
After incubation for 2 days at 30° C.
|
Duration
|
2 d
|
Type
|
ADDITION
|
Details
|
containing 8 ml of SM medium
|
Type
|
STIRRING
|
Details
|
the tubes were shaken on a reciprocal shaker (275 rpm) at 30° C
|
Type
|
STIRRING
|
Details
|
After shaking for 19 hours
|
Duration
|
19 h
|
Type
|
CUSTOM
|
Details
|
each 4 ml of culture broth was transferred to a 500-ml flask with two baffles
|
Type
|
ADDITION
|
Details
|
containing 200 ml of PM medium
|
Type
|
STIRRING
|
Details
|
shaken on a rotary shaker (180 rpm) at 30° C
|
Type
|
STIRRING
|
Details
|
After shaking for 4 days
|
Duration
|
4 d
|
Type
|
WAIT
|
Details
|
the shaking were further continued for 3 days
|
Duration
|
3 d
|
Type
|
CUSTOM
|
Details
|
in the supernatant of 7-day culture broth
|
Reaction Time |
30 min |
Name
|
|
Type
|
product
|
Smiles
|
CC1=NC=C(C(=C1O)CO)CO
|
Type | Value | Analysis |
---|---|---|
AMOUNT: MASS | 362 mg |
Source
|
Open Reaction Database (ORD) |
Description
|
The Open Reaction Database (ORD) is an open-access schema and infrastructure for structuring and sharing organic reaction data, including a centralized data repository. The ORD schema supports conventional and emerging technologies, from benchtop reactions to automated high-throughput experiments and flow chemistry. Our vision is that a consistent data representation and infrastructure to support data sharing will enable downstream applications that will greatly improve the state of the art with respect to computer-aided synthesis planning, reaction prediction, and other predictive chemistry tasks. |
REACTION_CXSMILES
|
NCC(O)=O.[CH3:6][C:7]1[N:12]=[CH:11][C:10]([CH2:13][OH:14])=[C:9]([CH2:15][OH:16])[C:8]=1[OH:17].Cl.[NH4+].[Cl-].NC(N)=O>C(O)C(N)(CO)CO.Cl>[CH3:6][C:7]1[C:8]([OH:17])=[C:9]([CH2:15][OH:16])[C:10]([CH2:13][OH:14])=[CH:11][N:12]=1 |f:1.2,3.4,6.7|
|
Name
|
reaction
|
Quantity
|
5 mL
|
Type
|
reactant
|
Smiles
|
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
NCC(=O)O
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
CC1=C(C(=C(C=N1)CO)CO)O.Cl
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
[NH4+].[Cl-]
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
NC(=O)N
|
Name
|
|
Quantity
|
0 (± 1) mol
|
Type
|
reactant
|
Smiles
|
CC1=C(C(=C(C=N1)CO)CO)O.Cl
|
Name
|
Tris-HCl
|
Quantity
|
0 (± 1) mol
|
Type
|
solvent
|
Smiles
|
C(C(CO)(CO)N)O.Cl
|
Control Type
|
UNSPECIFIED
|
Setpoint
|
30 °C
|
Type
|
CUSTOM
|
Details
|
a reciprocal shaking (275 rpm) for 30 min at 30° C
|
Rate
|
UNSPECIFIED
|
RPM
|
0
|
Conditions are dynamic
|
1
|
Details
|
See reaction.notes.procedure_details.
|
Type
|
CUSTOM
|
Details
|
was cultured in a flask
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc for 16 hours at 30° C.
|
Duration
|
16 h
|
Type
|
ADDITION
|
Details
|
the cell suspension of the strain
|
Type
|
CUSTOM
|
Details
|
was prepared
|
Type
|
WASH
|
Details
|
The cells of each reaction mixture were washed twice with sterile saline
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc
|
Type
|
WAIT
|
Details
|
the plates were incubated for 2-3 days at 30° C
|
Duration
|
2.5 (± 0.5) d
|
Type
|
CUSTOM
|
Details
|
were recovered
|
Type
|
ADDITION
|
Details
|
After centrifugation of the suspension, the cell suspension was diluted
|
Type
|
CUSTOM
|
Details
|
to give a turbidity of OD600=1.6
|
Type
|
ADDITION
|
Details
|
containing LBMCG
|
Type
|
WAIT
|
Details
|
on LBMCG plate, and then the plates were incubated for 4 days at 30° C
|
Duration
|
4 d
|
Type
|
ADDITION
|
Details
|
Ten colonies treated with 50 μg/ml of NTG grown on plates LBMCG
|
Type
|
ADDITION
|
Details
|
containing 10 μg/ml of Tc
|
Type
|
WAIT
|
Details
|
After incubation for 2 days at 30° C.
|
Duration
|
2 d
|
Type
|
ADDITION
|
Details
|
containing 8 ml of SM medium
|
Type
|
STIRRING
|
Details
|
the tubes were shaken on a reciprocal shaker (275 rpm) at 30° C
|
Type
|
STIRRING
|
Details
|
After shaking for 19 hours
|
Duration
|
19 h
|
Type
|
CUSTOM
|
Details
|
each 4 ml of culture broth was transferred to a 500-ml flask with two baffles
|
Type
|
ADDITION
|
Details
|
containing 200 ml of PM medium
|
Type
|
STIRRING
|
Details
|
shaken on a rotary shaker (180 rpm) at 30° C
|
Type
|
STIRRING
|
Details
|
After shaking for 4 days
|
Duration
|
4 d
|
Type
|
WAIT
|
Details
|
the shaking were further continued for 3 days
|
Duration
|
3 d
|
Type
|
CUSTOM
|
Details
|
in the supernatant of 7-day culture broth
|
Reaction Time |
30 min |
Name
|
|
Type
|
product
|
Smiles
|
CC1=NC=C(C(=C1O)CO)CO
|
Type | Value | Analysis |
---|---|---|
AMOUNT: MASS | 362 mg |
Source
|
Open Reaction Database (ORD) |
Description
|
The Open Reaction Database (ORD) is an open-access schema and infrastructure for structuring and sharing organic reaction data, including a centralized data repository. The ORD schema supports conventional and emerging technologies, from benchtop reactions to automated high-throughput experiments and flow chemistry. Our vision is that a consistent data representation and infrastructure to support data sharing will enable downstream applications that will greatly improve the state of the art with respect to computer-aided synthesis planning, reaction prediction, and other predictive chemistry tasks. |