molecular formula C5H5N3O B1679903 Pyrazinamide CAS No. 98-96-4

Pyrazinamide

Numéro de catalogue: B1679903
Numéro CAS: 98-96-4
Poids moléculaire: 123.11 g/mol
Clé InChI: IPEHBUMCGVEMRF-UHFFFAOYSA-N
Attention: Uniquement pour un usage de recherche. Non destiné à un usage humain ou vétérinaire.
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Description

Le pyrazinamide est un agent antimicrobien principalement utilisé dans le traitement de la tuberculose active. Il est particulièrement efficace lors de la phase initiale du traitement, généralement les deux premiers mois, et est utilisé en association avec d'autres agents antituberculeux. Le this compound présente une activité antibactérienne significative contre Mycobacterium tuberculosis et Mycobacterium africanum .

Mécanisme D'action

Target of Action

Pyrazinamide is a prodrug that is primarily active against Mycobacterium tuberculosis . The primary targets of this compound are the pyrazinamidase (PncA) enzyme, the ribosomal protein S1 (RpsA) , and the aspartate decarboxylase (PanD) . These targets play crucial roles in the survival and replication of the bacteria.

Mode of Action

This compound diffuses into active M. tuberculosis that express the pyrazinamidase enzyme, which converts this compound to its active form, pyrazinoic acid (POA) . POA then interferes with the bacterium’s ability to synthesize new fatty acids, which are required for growth and replication . It has been suggested that POA inhibits the function of the ribosomal protein S1 (RpsA) and the aspartate decarboxylase (PanD), thereby affecting the synthesis of essential metabolic cofactors .

Biochemical Pathways

The biochemical pathways affected by this compound are primarily related to fatty acid synthesis and the synthesis of essential metabolic cofactors . By inhibiting these pathways, this compound disrupts the normal functioning of the bacteria, leading to their eventual death .

Pharmacokinetics

This compound is well absorbed orally, with a bioavailability of over 90% . It is metabolized in the liver and has an elimination half-life of 9 to 10 hours . The drug is excreted through the kidneys . These properties impact the drug’s bioavailability and determine the effective concentration of the drug in the body.

Result of Action

The result of this compound’s action is the inhibition of the growth of M. tuberculosis, leading to the death of the bacteria . This makes this compound a highly specific and effective agent in the treatment of tuberculosis .

Action Environment

This compound is active only at a slightly acidic pH, both in vitro and in vivo . This suggests that the drug’s action, efficacy, and stability are influenced by the environmental pH. This property is particularly relevant in the context of tuberculosis, as the bacteria often reside in slightly acidic environments within the host .

Applications De Recherche Scientifique

Pyrazinamide has a wide range of applications in scientific research:

Analyse Biochimique

Biochemical Properties

Pyrazinamide is a prodrug that is converted into its active form, pyrazinoic acid, by the enzyme pyrazinamidase, which is expressed in active Mycobacterium tuberculosis . The conversion of this compound to pyrazinoic acid is a critical step in its biochemical activity .

Cellular Effects

This compound has a unique sterilizing effect, killing nonreplicating persisters that other TB drugs fail to kill . This makes it an essential drug for inclusion in any drug combinations for treating TB . It acts differently from common antibiotics by inhibiting multiple targets such as energy production, trans-translation, and perhaps pantothenate/coenzyme A required for persister survival .

Molecular Mechanism

The active form of this compound, pyrazinoic acid, exerts its effects at the molecular level through various mechanisms. It inhibits energy production, disrupts trans-translation, and may also affect the pantothenate/coenzyme A pathway, which is essential for the survival of persisters . Resistance to this compound is primarily driven by genetic variation in the pncA gene, which encodes the enzyme that converts this compound into pyrazinoic acid .

Temporal Effects in Laboratory Settings

The effects of this compound have been extensively studied in laboratory settings. It has been found to have high sterilizing activity, particularly in combination with other TB drugs

Metabolic Pathways

This compound is involved in the metabolic pathways of Mycobacterium tuberculosis. The pncA gene product, pyrazinamidase, is involved in the conversion of the prodrug this compound to its active form, pyrazinoic acid .

Transport and Distribution

This compound diffuses into active M. tuberculosis that express the pyrazinamidase enzyme. The active form, pyrazinoic acid, can leak out under acidic conditions to be converted to the protonated conjugate acid, which readily diffuses back into the bacilli and accumulates intracellularly .

Méthodes De Préparation

Voies de synthèse et conditions de réaction : Le pyrazinamide peut être synthétisé par plusieurs méthodes :

Méthodes de production industrielle : La production industrielle du this compound repose principalement sur l'hydratation de la 2-cyanopyrazine en raison de son rendement élevé et de sa capacité d'adaptation à grande échelle. Cette méthode implique l'utilisation de catalyseurs et de conditions de réaction contrôlées pour garantir une pureté et une efficacité élevées .

Types de réactions :

    Oxydation : Le this compound peut subir des réactions d'oxydation, en particulier en présence d'agents oxydants forts.

    Réduction : Il peut être réduit en son dérivé amine correspondant dans des conditions spécifiques.

    Substitution : Le this compound peut participer à des réactions de substitution, où le groupe amide peut être remplacé par d'autres groupes fonctionnels.

Réactifs et conditions courants :

    Agents oxydants : Peroxyde d'hydrogène, permanganate de potassium.

    Agents réducteurs : Borohydrure de sodium, hydrure de lithium et d'aluminium.

    Réactifs de substitution : Divers agents alkylants et nucléophiles.

Principaux produits :

4. Applications de la recherche scientifique

Le this compound a un large éventail d'applications dans la recherche scientifique :

5. Mécanisme d'action

Le this compound est un promédicament qui est converti en sa forme active, l'acide pyrazinoïque, par l'enzyme pyrazinamidase dans la cellule bactérienne. L'acide pyrazinoïque perturbe le potentiel de la membrane cellulaire bactérienne et interfère avec la synthèse des acides gras, ce qui conduit à la mort de Mycobacterium tuberculosis. Le médicament est plus actif à des niveaux de pH acides, qui se trouvent généralement dans les macrophages où les bactéries résident .

Composés similaires :

    Isoniazide : Un autre agent antituberculeux de première ligne qui inhibe la synthèse des acides mycoliques, des composants essentiels de la paroi cellulaire bactérienne.

    Rifampicine : Un antibiotique à large spectre qui inhibe la synthèse de l'ARN bactérien.

    Ethambutol : Inhibe la synthèse de l'arabinogalactane, un composant de la paroi cellulaire mycobactérienne.

Unicité du this compound : Le this compound est unique en son genre par sa capacité à cibler Mycobacterium tuberculosis dans des environnements acides, comme ceux qui se trouvent dans les macrophages. Cette propriété lui permet d'être efficace contre les populations bactériennes en cours de multiplication et dormantes, ce qui en fait un élément essentiel de la thérapie de courte durée de la tuberculose .

Comparaison Avec Des Composés Similaires

    Isoniazid: Another first-line antituberculous agent that inhibits the synthesis of mycolic acids, essential components of the bacterial cell wall.

    Rifampicin: A broad-spectrum antibiotic that inhibits bacterial RNA synthesis.

    Ethambutol: Inhibits the synthesis of arabinogalactan, a component of the mycobacterial cell wall.

Uniqueness of Pyrazinamide: this compound is unique in its ability to target Mycobacterium tuberculosis within acidic environments, such as those found in macrophages. This property allows it to be effective against both replicating and dormant bacterial populations, making it a critical component of short-course tuberculosis therapy .

Propriétés

IUPAC Name

pyrazine-2-carboxamide
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InChI

InChI=1S/C5H5N3O/c6-5(9)4-3-7-1-2-8-4/h1-3H,(H2,6,9)
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InChI Key

IPEHBUMCGVEMRF-UHFFFAOYSA-N
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Canonical SMILES

C1=CN=C(C=N1)C(=O)N
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Molecular Formula

C5H5N3O
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DSSTOX Substance ID

DTXSID9021215
Record name Pyrazinamide
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Molecular Weight

123.11 g/mol
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Physical Description

Pyrazinamide is a white powder. Sublimes from 318 °F. (NTP, 1992), Solid
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Boiling Point

SUB (NTP, 1992)
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Solubility

>18.5 [ug/mL] (The mean of the results at pH 7.4), Soluble (NTP, 1992), Solubility (mg/ml, 25 °C): methanol 13.8; absolute ethanol 5.7; isopropanol 3.8; ether 1.0; isooctane 0.01; chloroform 7.4, In water, 15 mg/ml @ 25 °C, 9.37e+01 g/L
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Mechanism of Action

Pyrazinamide diffuses into active _M. tuberculosis_ that express pyrazinamidase enzyme that converts pyrazinamide to the active form pyrazinoic acid. Pyrazinoic acid can leak out under acidic conditions to be converted to the protonated conjugate acid, which is readily diffused back into the bacilli and accumulate intracellularly. The net effect is that more pyrazinoic acid accumulates inside the bacillus at acid pH than at neutral pH. Pyrazinoic acid was thought to inhibit the enzyme fatty acid synthase (FAS) I, which is required by the bacterium to synthesise fatty acids. However, this theory was thought to have been discounted. However, further studies reproduced the results of FAS I inhibition as the putative mechanism first in whole cell assay of replicating M. tuberculosis bacilli which have shown that pyrazinoic acid and its ester inhibit the synthesis of fatty acids. This study was followed by in vitro assay of tuberculous FAS I enzyme that tested the activity with pyrazinamide, pyrazinoic acid and several classes of pyrazinamide analogs. Pyrazinamide and its analogs inhibited the activity of purified FAS I. It has also been suggested that the accumulation of pyrazinoic acid disrupts membrane potential and interferes with energy production, necessary for survival of M. tuberculosis at an acidic site of infection. Pyrazinoic acid has also been shown to bind to the ribosomal protein S1 (RpsA) and inhibit trans-translation. This may explain the ability of the drug to kill dormant mycobacteria., Pyrazinamide may be bacteriostatic or bactericidal in action, depending on the concentration of the drug attained at the site of the infection and the susceptibility of the infecting organism. In vitro and in vivo, the drug is active only at a slightly acidic pH. The exact mechanism of action of pyrazinamide has not been fully elucidated. The antimycobacterial activity of pyrazinamide appears to partly depend on conversion of the drug to pyrazinoic acid. Susceptible strains of Mycobacterium tuberculosis produce pyrazinamidase, an enzyme that deaminates pyrazinamide to pyrazinoic acid, and the in vitro susceptibility of a given strain of the organism appears to correspond to its pyrazinamidase activity. In vitro studies indicate that pyrazinoic acid has specific antimycobacterial activity against Mycobacterium tuberculosis. In addition, the fact that pyrazinoic acid lowers the pH of the environment below that which is necessary for growth of Mycobacterium tuberculosis appears to contribute to the drug's antimycobacterial activity in vitro., Unknown; pyrazinamide may be bacteriostatic or bactericidal, depending on its concentration and the susceptibility of the organism. It is active in vitro at an acidic pH of 5.6 or less, similar to that found in early, active tubercular inflammatory lesions.
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Color/Form

Crystals, Crystals from water or alcohol, Crystals from water or ethyl alcohol

CAS No.

98-96-4
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Melting Point

376 to 379 °F (NTP, 1992), 192 °C
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Synthesis routes and methods I

Procedure details

Diethylaniline (0.33 μL, 2.1 μmol, 1.1 equiv) was added in one portion to a stirred solution of the amine (1.0 mg, 1.9 μmol, 1 equiv) in THF (0.2 mL) at 0° C. under an argon atmosphere and the solution was stirred for 5 min. 2-Pyrazinecarboxylic acid (0.31 mg, 2.5 μmol, 1.3 equiv), 1-[3-(dimethylamino)propyl]-3-ethylcarbodiimide hydrochloride (0.48 mg, 2.5 μmol, 1.3 equiv) and 1-hydroxybenzotriazole (0.31 mg, 2.3 μmol, 1.2 equiv) were then added separately, each in one portion, to the above solution at 0° C. The reaction mixture was warmed to 23° C. over 17 h 40 min, then was quenched with saturated aqueous ammonium chloride solution (3 mL). The mixture was diluted with ethyl acetate (10 mL) and the layers were separated. The aqueous layer was extracted with ethyl acetate (10 mL) and the combined organic layer was dried over sodium sulfate. Concentration in vacuo left a white solid, which was purified by flash column chromatography (80% ethyl acetate-hexanes) to give the pyrazine-2-carboxylic acid amide derivative (1.1 mg, 92%) as a white solid.
Quantity
0.33 μL
Type
reactant
Reaction Step One
[Compound]
Name
amine
Quantity
1 mg
Type
reactant
Reaction Step One
Name
Quantity
0.2 mL
Type
solvent
Reaction Step One
Quantity
0.31 mg
Type
reactant
Reaction Step Two
Quantity
0.48 mg
Type
reactant
Reaction Step Two
Quantity
0.31 mg
Type
reactant
Reaction Step Two

Synthesis routes and methods II

Procedure details

To a 15-mL polypropylene centrifuge tube was added 3.73 mL of 50 mM potassium phosphate buffer (pH 7.0), 1.0 mL of a suspension of 22.1 mg dry cell weight E. coli SW132 wet cells (prepared as described in Example 10) in 50 mM potassium phosphate buffer (pH 7.0), and 0.2694 g of pyrazinecarbonitrile. The final concentration of pyrazinecarbonitrile was 0.512 M. The reaction mixture was mixed on a rotating platform at 23° C. After 15 min, 7.50 mL of 95:5 acetonitrile/water containing 0.30 M N,N-dimethylbenzamide (HPLC external standard) was added to the reaction, the resulting mixture centrifuged, and a 0.100 mL of the supernatant mixed with 0.900 mL of acetonitrile and analyzed by HPLC. The conversion of pyrazinecarbonitrile was 100%, and the yields of pyrazinamide and pyrazinecarboxylic acid were 100% and 0%, respectively.
Name
potassium phosphate
Quantity
3.73 mL
Type
reactant
Reaction Step One
[Compound]
Name
suspension
Quantity
1 mL
Type
reactant
Reaction Step One
Quantity
0.2694 g
Type
reactant
Reaction Step Two
Quantity
0 (± 1) mol
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7.5 mL
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Synthesis routes and methods III

Procedure details

The mixture of (R)-tert-butyl 1-(6-chloro-5-cyanopyrazin-2-yl)piperidin-3-ylcarbamate (87, 240 mg, 0.71 mmol), 4-(1-methylpiperidin-4-yl)aniline (280 mg, 1.42 mmol), fine-powder cesium carbonate (930 mg, 2.84 mmol), Pd(OAc)2 (32 mg, 0.14 mmol), BINAP (88 mg, 0.14 mmol) in 20 mL dioxane was degassed with nitrogen stream for 3 min. It was then stirred in 115° C. bath in nitrogen atmosphere for 2 hours. The mixture was cooled to RT, diluted with 100 mL EtOAc, and filtered. The filtrate was concentrated in vacuo and subjected to silica flash column using 0 to 15% MeOH in chloroform to isolate (R)-tert-butyl 1-(5-cyano-6-(4-(1-methylpiperidin-4-yl)phenylamino)pyrazin-2-yl)piperidin-3-ylcarbamate (204) in >90% yield. It was dissolved in 30 mL MeOH and 3 mL DMSO. To it were added two NaOH solid bead (about 200 mg) and then 1 mL 30% H2O2. The mixture was stirred at RT for 2 hours, diluted with 10 mL MeCN, stirred for 5 min, and concentrated on rotavap. The residue was diluted with 120 mL EtOAc, washed with water, concentrated in vacuo to dryness to give crude (R)-tert-butyl 1-(5-carbamoyl-6-(4-(1-methylpiperidin-4-yl)phenylamino)pyrazin-2-yl)piperidin-3-ylcarbamate (205). It was treated with 40 mL commercial 4N HCl in dioxane for 40 min, and concentrated in vacuo to afford crude (R)-5-(3-aminopiperidin-1-yl)-3-(4-(1-methylpiperidin-4-yl)phenylamino)pyrazine-2-carboxamide (206) hydrochloride. Crude 206 hydrochloride (60 mg, 0.12 mmol) was dissolved in 3 mL DMF. To it were added DIEA (210 μL, 1.2 mmol) and dimethylcarbamoyl chloride (34 μL, 0.36 mmol). The mixture was stirred at RT for 1.5 hour, acidified with 0.3 mL TFA, and directly subjected to reverse phase prep HPLC using 5 mM HCl (aq) and neat MeCN as mobile phases to isolate (R)-5-(3-(3,3-dimethylureido)piperidin-1-yl)-3-(4-O-methylpiperidin-4-yl)phenylamino)pyrazine-2-carboxamide (207) as HCl salt (36 mg). MS found for C25H36N8O2 as (M+H)+ 481.2, (M−H)− 479.3. UV: λ=268, 277, 306, 336, 372 nm.
Quantity
60 mg
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reactant
Reaction Step One
Name
Quantity
3 mL
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reactant
Reaction Step One
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Quantity
210 μL
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34 μL
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Quantity
0.3 mL
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Retrosynthesis Analysis

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Top-N result to add to graph 6

Feasible Synthetic Routes

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Reactant of Route 6
Pyrazinamide

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